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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0444s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 31384.2 Da PI: 4.4755 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 35 | 83 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g SapurV1A.0444s0130.1.p 35 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 83 67******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.705 | 34 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.10E-30 | 34 | 90 | No hit | No description |
SuperFamily | SSF54171 | 5.82E-21 | 35 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 35 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-12 | 37 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDFTRSTETI STPSPSKTKR KQQQQQPQNQ QEVRFLGVRR RPWGRYAAEI RDPSTKERHW 60 LGTFDTAEEA ALAYDRAARS MRGSKARTNF VYSDMPPASS VTSIISPDES QLDNSAFFAP 120 IPRRNTHQND TSCQQLCFSQ DQYAFTAPAF GNSSSNWLEG GAGWVQGFEA GAGDRPCGSI 180 EPNHADSLDV ANGPNYLSNT DSIELPPLPP DVNSSCYGCD MGHEFWNDTG FFGFHEEQLN 240 DANGLEVSGS IMGFEPNDFG HGSLFGIVQS VTDGLDLGST STFYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 35 | 90 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002297886.2 | 1e-165 | AP2/EREBP-like transcription factor family protein | ||||
TrEMBL | B9GMV6 | 1e-165 | B9GMV6_POPTR; AP2/EREBP-like transcription factor family protein | ||||
STRING | POPTR_0001s12820.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 4e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0444s0130.1.p |