PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0444s0130.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 286aa    MW: 31384.2 Da    PI: 4.4755
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0444s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-193583355
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  SapurV1A.0444s0130.1.p 35 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 83
                            67******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-343497IPR001471AP2/ERF domain
PROSITE profilePS5103220.7053491IPR001471AP2/ERF domain
CDDcd000186.10E-303490No hitNo description
SuperFamilySSF541715.82E-213592IPR016177DNA-binding domain
PRINTSPR003673.6E-83546IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-293591IPR001471AP2/ERF domain
PfamPF008475.4E-123783IPR001471AP2/ERF domain
PRINTSPR003673.6E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDFTRSTETI STPSPSKTKR KQQQQQPQNQ QEVRFLGVRR RPWGRYAAEI RDPSTKERHW  60
LGTFDTAEEA ALAYDRAARS MRGSKARTNF VYSDMPPASS VTSIISPDES QLDNSAFFAP  120
IPRRNTHQND TSCQQLCFSQ DQYAFTAPAF GNSSSNWLEG GAGWVQGFEA GAGDRPCGSI  180
EPNHADSLDV ANGPNYLSNT DSIELPPLPP DVNSSCYGCD MGHEFWNDTG FFGFHEEQLN  240
DANGLEVSGS IMGFEPNDFG HGSLFGIVQS VTDGLDLGST STFYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-193590359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297886.21e-165AP2/EREBP-like transcription factor family protein
TrEMBLB9GMV61e-165B9GMV6_POPTR; AP2/EREBP-like transcription factor family protein
STRINGPOPTR_0001s12820.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-34ERF family protein